SMTL ID : 7vqj.2 (1 other biounit)

Crystal structure of NDM-1 in complex with hydrolyzed 1u.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.92, H.94, D.96, H.161, C.180 Ligands: 7T6.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.92, A:H.94, A:H.161 ZN.2: 4 residues within 4Å: Chain A: D.96, C.180, H.222 Ligands: 7T6.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.96, A:C.180, A:H.222

1 x 7T6: (2R)-2-[(1S)-1-methoxy-2-oxidanyl-2-oxidanylidene-ethyl]-5-methylidene-2H-1,3-thiazine-4-carboxylic acid(Non-covalent)

7T6.3: 13 residues within 4Å: Chain A: M.39, W.65, H.92, H.94, D.96, H.161, C.180, K.183, G.191, N.192, H.222 Ligands: ZN.1, ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.96, A:N.192, A:N.192 Salt bridges: A:H.92, A:H.94, A:H.161, A:H.161, A:K.183, A:H.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, H.X., Crystal structure of NDM-1 in complex with hydrolyzed 1u. To Be Published

Release Date

2022-10-26

Peptides

Metallo-beta-lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Metallo-beta-lactamase NDM-1

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