SMTL ID : 5zqa.1

Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: E.74 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.74, H2O.1, H2O.4, H2O.4, H2O.6 MG.2: 3 residues within 4Å: Chain A: D.77, H.189, E.191 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.189, A:E.191, H2O.1 MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: R.112, K.198, D.204 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.112, A:R.112, A:R.112, A:S.116, A:D.204, A:D.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, J.H. et al., Crystal Structures of Penicillin-Binding Protein D2 from Listeria monocytogenes and Structural Basis for Antibiotic Specificity. Antimicrob. Agents Chemother. (2018)

Release Date

2018-07-25

Peptides

Lmo2812 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lmo2812 protein

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