SMTL ID : 5zrr.1

Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in monoethyl succinate bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

1 x 9J3: 4-ethoxy-4-oxobutanoic acid(Non-covalent)

9J3.1: 8 residues within 4Å: Chain A: G.63, F.64, T.65, A.134, M.135, W.159, I.182, H.212 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.159, A:I.182 Hydrogen bonds: A:F.64, A:T.65, A:M.135 Salt bridges: A:H.212

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: E.178, D.208, E.254 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.178, A:E.178, A:D.208, A:E.254 ZN.3: 1 residues within 4Å: Chain A: E.15 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.15, A:E.15, H2O.4 ZN.4: 2 residues within 4Å: Chain A: D.162, T.164 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.162, A:T.164, A:T.164, H2O.2, H2O.7 ZN.5: 3 residues within 4Å: Chain A: G.1, D.4, E.8 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.1, A:D.4, A:D.4, A:E.8, H2O.9

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: F.35, A.36, D.109, Y.110, E.113, R.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.109, A:R.114 Water bridges: A:Y.110

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain A: S.37, G.38 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.38 Water bridges: A:F.39, A:F.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numoto, N. et al., Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle. Biochemistry (2018)

Release Date

2018-09-12

Peptides

Alpha/beta hydrolase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase family protein

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