SMTL ID : 5zrs.1

Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S mutant in monoethyl adipate bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x 9J6: 6-ethoxy-6-oxohexanoic acid(Non-covalent)

9J6.1: 7 residues within 4Å: Chain A: G.63, F.64, A.134, M.135, W.159, I.182, H.212 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.64, A:F.64, A:W.159, A:W.159 Hydrogen bonds: A:F.64, A:M.135 Salt bridges: A:H.212

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: E.178, D.208, G.209, E.254 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.178, A:E.178, A:D.208, A:E.254 ZN.3: 2 residues within 4Å: Chain A: D.162, T.164 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.162, A:T.164, A:T.164, H2O.7, H2O.7 ZN.4: 3 residues within 4Å: Chain A: G.1, D.4, E.8 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.1, A:D.4, A:D.4, A:E.8, H2O.6

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: S.34, F.35, A.36, F.39, N.91 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.34, A:A.36, A:F.39, H2O.5, H2O.7, H2O.11

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: E.178, K.190, E.206, E.254, E.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.190, A:E.206 Water bridges: A:E.206, A:E.254, A:R.257 GOL.7: 7 residues within 4Å: Chain A: G.10, P.11, P.24, F.25, E.49, D.51, E.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.52 Water bridges: A:G.10, A:D.51, A:E.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numoto, N. et al., Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle. Biochemistry (2018)

Release Date

2018-09-12

Peptides

Alpha/beta hydrolase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase family protein

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