SMTL ID : 5zvt.2 (1 other biounit)

Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-10-10-10-2-1-2-mer

Ligands

10 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 14 residues within 4Å: Chain K: G.2, N.3, I.13 Chain L: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:L.121, L:L.145, L:A.148, L:K.149, L:L.152, L:L.159, L:P.162, L:Y.166, L:A.169 MYR.2: 14 residues within 4Å: Chain M: G.2, N.3, I.13 Chain N: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain N Hydrophobic interactions: N:L.121, N:L.145, N:A.148, N:K.149, N:L.152, N:L.159, N:P.162, N:Y.166, N:A.169 MYR.3: 13 residues within 4Å: Chain O: G.2, I.13 Chain P: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain P Hydrophobic interactions: P:L.121, P:L.145, P:A.148, P:K.149, P:L.152, P:L.159, P:P.162, P:Y.166, P:A.169 MYR.4: 14 residues within 4Å: Chain Q: G.2, N.3, I.13 Chain R: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain R Hydrophobic interactions: R:L.121, R:L.145, R:A.148, R:K.149, R:L.152, R:L.159, R:P.162, R:Y.166, R:A.169 MYR.5: 14 residues within 4Å: Chain S: G.2, N.3, I.13 Chain T: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain T Hydrophobic interactions: T:L.121, T:L.145, T:A.148, T:K.149, T:L.152, T:L.159, T:P.162, T:Y.166, T:A.169 MYR.6: 13 residues within 4Å: Chain U: G.2, I.13 Chain V: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain V Hydrophobic interactions: V:L.121, V:L.145, V:A.148, V:K.149, V:L.152, V:L.159, V:P.162, V:Y.166, V:A.169 MYR.7: 14 residues within 4Å: Chain W: G.2, N.3, I.13 Chain X: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain X Hydrophobic interactions: X:L.121, X:L.145, X:A.148, X:K.149, X:L.152, X:L.159, X:P.162, X:Y.166, X:A.169 MYR.8: 14 residues within 4Å: Chain Y: G.2, N.3, I.13 Chain Z: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain Z Hydrophobic interactions: Z:L.121, Z:L.145, Z:A.148, Z:K.149, Z:L.152, Z:L.159, Z:P.162, Z:Y.166, Z:A.169 MYR.9: 13 residues within 4Å: Chain 0: G.2, I.13 Chain 1: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain 1 Hydrophobic interactions: 1:L.121, 1:L.145, 1:A.148, 1:K.149, 1:L.152, 1:L.159, 1:P.162, 1:Y.166, 1:A.169 MYR.10: 14 residues within 4Å: Chain 2: G.2, N.3, I.13 Chain 3: L.121, M.125, L.145, A.148, K.149, L.152, C.158, L.159, P.162, Y.166, A.169 9 PLIP interactions: 9 interactions with chain 3 Hydrophobic interactions: 3:L.121, 3:L.145, 3:A.148, 3:K.149, 3:L.152, 3:L.159, 3:P.162, 3:Y.166, 3:A.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-07-04

Peptides

Outer capsid VP7: ABCDEFGHIJ
N-terminus of outer capsid protein VP5: KMOQSUWY02
C-terminus of outer capsid protein VP5: LNPRTVXZ13
Core protein VP6: 45
VP1: 6
VP3: 78

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
l

B
b

C
f

D
d

E
h

F
j

G
n

H
p

I
r

J
t

K
A

M
C

O
E

Q
G

S
I

U
K

W
M

Y
O

0
Q

2
S

L
B

N
D

P
F

R
H

T
J

V
L

X
N

Z
P

1
R

3
T

4
U

5
V

6
W

7
X

8
Y

Outer capsid VP7

N-terminus of outer capsid protein VP5

C-terminus of outer capsid protein VP5

Core protein VP6

VP1

VP3

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