SMTL ID : 6m99.1

In situ structure of transcriptional enzyme complex and asymmetric inner capsid protein of aquareovirus at primed state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-10-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain B: K.410, G.411, S.412, K.414, S.439, D.440, H.522, R.552 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.411, B:D.440 Salt bridges: B:K.410, B:K.414, B:H.522, B:R.552

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain C: C.119, V.121, C.122, H.135, D.139 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.119, C:C.122, C:H.135, C:D.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, K. et al., In SituStructures of the Polymerase Complex and RNA Genome Show How Aquareovirus Transcription Machineries Respond to Uncoating. J. Virol. (2018)

Release Date

2018-09-05

Peptides

VP2: A
Putative core protein NTPase/VP5: B
VP3: CDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

VP2

Putative core protein NTPase/VP5

VP3

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