- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LYS: LYSINE(Non-covalent)
- 2 x KRS: cladosporin(Non-covalent)
KRS.2: 16 residues within 4Å:- Chain A: R.263, T.270, H.271, S.272, F.275, M.277, L.424, A.425, T.426, G.477, M.478, G.479, R.482, I.492
- Ligands: LYS.1, MPD.4
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:H.271, A:M.277, A:T.426
- Hydrogen bonds: A:S.272
- Salt bridges: A:R.482
- pi-Stacking: A:H.271, A:F.275
KRS.8: 15 residues within 4Å:- Chain B: R.263, E.265, T.270, H.271, S.272, F.275, M.277, E.423, L.424, T.426, G.477, M.478, G.479, R.482
- Ligands: LYS.7
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:H.271, B:F.275, B:T.426
- Hydrogen bonds: B:E.265, B:S.272, B:R.482
- Water bridges: B:R.263, B:D.481
- Salt bridges: B:R.482
- pi-Stacking: B:H.271, B:F.275
- 5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 8 residues within 4Å:- Chain A: G.91, D.92, R.181, R.185
- Chain B: L.204, G.250, G.251, F.252
6 PLIP interactions:1 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:R.185, B:F.252, B:F.252, B:F.252
- Water bridges: B:D.253, B:D.253
MPD.4: 6 residues within 4Å:- Chain A: E.265, G.266, S.267, D.268, H.271
- Ligands: KRS.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.266, A:G.266
MPD.5: 4 residues within 4Å:- Chain A: S.335, E.336, E.340, Q.341
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Q.341
- Water bridges: A:S.332, A:G.339
MPD.6: 5 residues within 4Å:- Chain A: E.329, Y.331, I.342, P.344, I.408
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.331, A:I.408
- Hydrogen bonds: A:I.342
- Water bridges: A:S.332, A:Q.341
MPD.9: 8 residues within 4Å:- Chain A: L.204, G.250, G.251, F.252
- Chain B: G.91, D.92, R.181, R.185
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.204, A:F.252, A:F.252, A:F.252, B:R.185
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dranow, D.M. et al., Crystal Structure of Lysyl-tRNA Synthetase from Mycobacterium ulcerans complexed with L-lysine and Cladosporin. to be published
- Release Date
- 2017-08-30
- Peptides
- Lysine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LYS: LYSINE(Non-covalent)
- 2 x KRS: cladosporin(Non-covalent)
- 5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dranow, D.M. et al., Crystal Structure of Lysyl-tRNA Synthetase from Mycobacterium ulcerans complexed with L-lysine and Cladosporin. to be published
- Release Date
- 2017-08-30
- Peptides
- Lysine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C