SMTL ID : 6aug.3 (2 other biounits)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with SR16832

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-dimer

Ligands

2 x BXG: 2-chloro-N-(6-methoxyquinolin-4-yl)-5-nitrobenzamide(Covalent)(Non-covalent)

BXG.1: 16 residues within 4Å: Chain A: F.81, C.84, Q.85, R.87, S.88, H.122, I.125, Y.126, L.129, L.139, F.162, M.163, H.248, L.252, Y.272 Ligands: KNA.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.85, A:I.125, A:L.129 Hydrogen bonds: A:C.84, A:Y.126 pi-Stacking: A:F.81, A:F.162 BXG.3: 14 residues within 4Å: Chain B: F.81, C.84, Q.85, S.88, I.125, Y.126, L.129, V.138, L.139, F.162, M.163, H.248, L.252, L.275 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.81, B:Q.85, B:I.125, B:L.129, B:V.138, B:F.162, B:F.162 Hydrogen bonds: B:C.84

1 x KNA: nonanoic acid(Non-covalent)

KNA.2: 8 residues within 4Å: Chain A: G.83, C.84, F.86, R.87, I.140, S.141, E.142 Ligands: BXG.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.86, A:R.87, A:I.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife (2018)

Release Date

2018-09-12

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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