SMTL ID : 6avi.1 (1 other biounit)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and Nonanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Covalent)

GW9.1: 12 residues within 4Å: Chain A: F.81, C.84, R.87, S.88, I.125, L.129, F.162, H.248, L.252, L.264, Y.272 Ligands: KNA.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.81, A:R.87, A:I.125, A:L.129, A:F.162 Hydrogen bonds: A:C.84 Water bridges: A:S.88

1 x KNA: nonanoic acid(Non-covalent)

KNA.2: 9 residues within 4Å: Chain A: G.83, C.84, R.87, L.132, I.140, S.141, E.142, M.163 Ligands: GW9.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.87, A:R.87, A:L.132, A:I.140, A:I.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife (2018)

Release Date

2018-09-12

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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