SMTL ID : 6ayq.1

Crystal structure of Campylobacter jejuni 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with methylthio-DADMe-Immucillin-A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

2 x TDI: (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL(Non-covalent)

TDI.1: 19 residues within 4Å: Chain A: A.18, M.19, I.60, V.86, A.87, G.88, E.160, F.161, I.162, C.180, E.181, M.182, E.183, S.205, D.206, A.208, F.216 Chain B: I.112, F.115 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.162, A:D.206, A:D.206 Salt bridges: A:E.22, A:E.183 TDI.2: 19 residues within 4Å: Chain A: I.112, F.115 Chain B: A.18, M.19, I.60, V.86, A.87, G.88, E.160, F.161, I.162, C.180, E.181, M.182, E.183, S.205, D.206, A.208, F.216 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.162, B:D.206, B:D.206 Water bridges: B:R.202 Salt bridges: B:E.22, B:E.183

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.217 Chain B: F.115, H.117, P.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ducati, R.G. et al., Transition-State Analogues of Campylobacter jejuni 5'-Methylthioadenosine Nucleosidase. ACS Chem. Biol. (2018)

Release Date

2018-09-12

Peptides

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

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