SMTL ID : 6ays.4 (3 other biounits)

Crystal structure of Campylobacter jejuni 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with hexylthio-DADMe-Immucillin-A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x HT6: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(hexylsulfanyl)methyl]pyrrolidin-3-ol(Non-covalent)

HT6.1: 20 residues within 4Å: Chain A: A.18, M.19, I.60, V.86, A.87, G.88, E.160, F.161, I.162, C.180, E.181, M.182, E.183, S.205, D.206, A.208, F.216 Chain B: I.112, F.115, P.123 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.115, B:F.115, B:P.123, A:I.60 Hydrogen bonds: A:I.162, A:D.206, A:D.206 Water bridges: A:R.202 Salt bridges: A:E.22, A:E.183 HT6.2: 20 residues within 4Å: Chain A: I.112, F.115, H.117 Chain B: A.18, M.19, I.60, V.86, A.87, G.88, E.160, F.161, I.162, C.180, E.181, M.182, E.183, S.205, D.206, A.208, F.216 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.60, A:F.115, A:F.115 Hydrogen bonds: B:I.162, B:I.162, B:D.206 Water bridges: B:R.202 Salt bridges: B:E.22, B:E.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ducati, R.G. et al., Transition-State Analogues of Campylobacter jejuni 5'-Methylthioadenosine Nucleosidase. ACS Chem. Biol. (2018)

Release Date

2018-09-12

Peptides

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

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