SMTL ID : 6bg3.1

Structure of (3S,4S)-1-benzyl-4-(3-(3-(trifluoromethyl)phenyl)ureido)piperidin-3-yl acetate bound to DCN1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x DOJ: N-{(3S,4S)-1-benzyl-3-[(1S)-1-hydroxyethoxy]piperidin-4-yl}-N'-[3-(trifluoromethyl)phenyl]urea(Non-covalent)

DOJ.1: 21 residues within 4Å: Chain A: I.208, I.211, Q.212, F.214, P.222, A.223, V.227, I.230, A.231, F.234, A.236, T.238, Q.239, E.241, F.242, E.246, F.289, M.302, A.305, Y.306, L.309 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.208, A:I.211, A:I.211, A:A.231, A:A.236, A:F.242, A:F.242, A:F.289, A:A.305, A:L.309 Hydrogen bonds: A:Q.212, A:Q.239, A:Q.239 pi-Stacking: A:Y.306 Halogen bonds: A:V.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hammill, J.T. et al., Piperidinyl Ureas Chemically Control Defective in Cullin Neddylation 1 (DCN1)-Mediated Cullin Neddylation. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

Endolysin, DCN1-like protein 1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin, DCN1-like protein 1 chimera

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