SMTL ID : 6bg5.1

Structure of 1-(benzo[d][1,3]dioxol-5-ylmethyl)-1-(1-propylpiperidin-4-yl)-3-(3-(trifluoromethyl)phenyl)urea bound to DCN1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x DQD: N-[(2H-1,3-benzodioxol-5-yl)methyl]-N-(1-propylpiperidin-4-yl)-N'-[3-(trifluoromethyl)phenyl]urea(Non-covalent)

DQD.1: 18 residues within 4Å: Chain A: I.208, I.211, Q.212, F.214, P.222, A.223, V.227, I.230, A.231, A.236, T.238, Q.239, E.241, F.242, F.289, A.305, Y.306, L.309 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.208, A:I.211, A:P.222, A:A.236, A:F.242, A:F.242, A:F.289, A:Y.306, A:L.309 Hydrogen bonds: A:Q.239 Halogen bonds: A:V.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hammill, J.T. et al., Piperidinyl Ureas Chemically Control Defective in Cullin Neddylation 1 (DCN1)-Mediated Cullin Neddylation. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

Endolysin, DCN1-like protein 1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin, DCN1-like protein 1 chimera

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