SMTL ID : 7kwa.1

Structure of DCN1 bound to N-((4S,5S)-3-(aminomethyl)-7-ethyl-4-(4-fluorophenyl)-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-(trifluoromethyl)benzamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x YHP: N-[(4S,5S)-3-(aminomethyl)-7-ethyl-4-(4-fluorophenyl)-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl]-3-(trifluoromethyl)benzamide(Non-covalent)

YHP.1: 24 residues within 4Å: Chain A: I.208, I.211, Q.212, F.214, C.215, P.222, A.223, S.224, I.225, V.227, L.228, I.230, A.231, F.234, A.236, T.238, Q.239, C.240, E.241, F.242, F.289, A.305, Y.306, L.309 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.208, A:I.211, A:I.211, A:P.222, A:V.227, A:V.227, A:A.231, A:A.236, A:F.242, A:F.242, A:F.289, A:F.289, A:L.309 Hydrogen bonds: A:C.240 pi-Stacking: A:Y.306 Halogen bonds: A:V.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.S. et al., Improvement of Oral Bioavailability of Pyrazolo-Pyridone Inhibitors of the Interaction of DCN1/2 and UBE2M. J.Med.Chem. (2021)

Release Date

2021-07-14

Peptides

Endolysin,DCN1-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin,DCN1-like protein 1

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