SMTL ID : 6bp2.1

Therapeutic human monoclonal antibody MR191 bound to a marburgvirus glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.17 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.78, D.99, H.108, Q.110, R.140, G.141, V.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.140 NAG-NAG-BMA.5: 7 residues within 4Å: Chain E: N.78, D.99, H.108, Q.110, R.140, G.141, V.143 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.140 NAG-NAG-BMA.9: 7 residues within 4Å: Chain I: N.78, D.99, H.108, Q.110, R.140, G.141, V.143 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.140

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: N.155, T.157, V.158 Chain B: N.40, T.41 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 9 residues within 4Å: Chain A: L.38, Q.41, W.124, N.148 Chain B: N.129, A.132 Chain J: W.97 Ligands: BMA-MAN-MAN.3, BMA-MAN-MAN.3 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain E: N.155, T.157, V.158 Chain F: N.40, T.41 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 9 residues within 4Å: Chain B: W.97 Chain E: L.38, Q.41, W.124, N.148 Chain F: N.129, A.132 Ligands: BMA-MAN-MAN.7, BMA-MAN-MAN.7 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain I: N.155, T.157, V.158 Chain J: N.40, T.41 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 9 residues within 4Å: Chain F: W.97 Chain I: L.38, Q.41, W.124, N.148 Chain J: N.129, A.132 Ligands: BMA-MAN-MAN.11, BMA-MAN-MAN.11 No protein-ligand interaction detected (PLIP)

3 x BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose

BMA-MAN-MAN.3: 2 residues within 4Å: Chain J: F.101 Ligands: NAG-NAG.4 No protein-ligand interaction detected (PLIP) BMA-MAN-MAN.7: 2 residues within 4Å: Chain B: F.101 Ligands: NAG-NAG.8 No protein-ligand interaction detected (PLIP) BMA-MAN-MAN.11: 2 residues within 4Å: Chain F: F.101 Ligands: NAG-NAG.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, L.B. et al., The Marburgvirus-Neutralizing Human Monoclonal Antibody MR191 Targets a Conserved Site to Block Virus Receptor Binding. Cell Host Microbe (2018)

Release Date

2018-01-17

Peptides

Envelope glycoprotein: AEI
Envelope glycoprotein GP2: BFJ
MR191 Fab Heavy Chain: CGK
MR191 Fab Light Chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
H

G
H

K
H

D
L

H
L

L
L

Envelope glycoprotein

Envelope glycoprotein GP2

MR191 Fab Heavy Chain

MR191 Fab Light Chain

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