SMTL ID : 6cbk.1 (1 other biounit)

X-ray structure of NeoB from Streptomyces fradiae in complex with PMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.1: 13 residues within 4Å: Chain A: S.103, G.104, T.105, Y.129, H.130, G.131, S.176, D.204, V.206, K.207, K.231 Chain B: F.257, T.258 14 PLIP interactions: 9 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:V.206 Hydrogen bonds: A:G.104, A:T.105, A:T.105, A:K.231, B:T.258, B:T.258, B:T.258, B:T.258 Water bridges: A:T.105, A:T.105, A:K.207, B:S.259 pi-Stacking: A:Y.129 PMP.3: 14 residues within 4Å: Chain A: F.257, T.258 Chain B: S.103, G.104, T.105, Y.129, H.130, G.131, S.176, D.204, V.206, K.207, K.231, H.424 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.206 Hydrogen bonds: B:G.104, B:T.105, B:K.231, B:H.424, A:T.258, A:T.258 Water bridges: B:Y.129, B:Y.129, B:K.207, B:K.207, A:S.259 pi-Stacking: B:Y.129

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.53, D.57, P.58, R.275, A.350 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dow, G.T. et al., The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin. Protein Sci. (2018)

Release Date

2018-03-07

Peptides

Neamine transaminase NeoN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neamine transaminase NeoN

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