SMTL ID : 6cbk.2 (1 other biounit)

X-ray structure of NeoB from Streptomyces fradiae in complex with PMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.1: 13 residues within 4Å: Chain A: S.103, G.104, T.105, Y.129, H.130, G.131, S.176, D.204, V.206, K.207, K.231 Chain B: F.257, T.258 15 PLIP interactions: 5 interactions with chain B, 10 interactions with chain A Hydrogen bonds: B:T.258, B:T.258, B:T.258, B:T.258, A:S.103, A:G.104, A:T.105, A:T.105, A:K.231 Water bridges: B:S.259, A:Y.132, A:K.207, A:K.207 Hydrophobic interactions: A:V.206 pi-Stacking: A:Y.129 PMP.3: 14 residues within 4Å: Chain A: F.257, T.258 Chain B: S.103, G.104, T.105, Y.129, H.130, G.131, S.176, D.204, V.206, K.207, K.231, H.424 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.206 Hydrogen bonds: B:G.104, B:T.105, B:T.105, B:T.105, B:K.231, B:H.424, B:H.424, A:T.258, A:T.258 pi-Stacking: B:Y.129 Water bridges: A:S.259

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.69, G.70 Chain B: A.28, S.29 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.29 Water bridges: B:A.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dow, G.T. et al., The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin. Protein Sci. (2018)

Release Date

2018-03-07

Peptides

Neamine transaminase NeoN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Neamine transaminase NeoN

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