SMTL ID : 6cbl.2 (3 other biounits)

x-ray structure of NeoB from Streptomyces fradiae in complex with neamine as an external aldimine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x DOW: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2-amino-2,6-dideoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-glucopyranoside(Non-covalent)

DOW.1: 21 residues within 4Å: Chain A: T.13, R.48, S.103, G.104, T.105, Y.129, H.130, G.131, S.176, D.204, V.206, K.207, K.231, Y.341, D.344, N.345, N.391, V.392, D.394 Chain B: F.257, T.258 19 PLIP interactions: 3 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:T.258, B:T.258, A:T.13, A:T.13, A:G.104, A:T.105, A:K.207, A:K.231, A:K.231, A:K.231, A:D.344, A:N.345, A:N.345, A:N.391 Water bridges: B:S.259, A:Y.341, A:Y.341 Hydrophobic interactions: A:V.206 pi-Stacking: A:Y.129 DOW.2: 21 residues within 4Å: Chain A: F.257, T.258 Chain B: T.13, R.48, S.103, G.104, T.105, Y.129, H.130, G.131, S.176, D.204, V.206, K.207, K.231, Y.341, D.344, N.345, N.391, V.392, D.394 19 PLIP interactions: 16 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.206 Hydrogen bonds: B:T.13, B:T.13, B:G.104, B:T.105, B:K.207, B:K.231, B:K.231, B:K.231, B:Y.341, B:D.344, B:N.345, B:N.345, A:T.258, A:T.258 Water bridges: B:D.394, B:D.394, A:S.259 pi-Stacking: B:Y.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dow, G.T. et al., The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin. Protein Sci. (2018)

Release Date

2018-02-21

Peptides

Neamine transaminase NeoN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Neamine transaminase NeoN

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