- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.05 Å
- Oligo State
- hetero-3-1-1-1-1-1-1-mer
- Ligands
- 13 x SO4: SULFATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain C: R.1058, G.1060, E.1061, M.1062, E.1063
- Chain D: R.414
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.1058, C:E.1061, C:M.1062, C:E.1063
EDO.7: 6 residues within 4Å:- Chain C: R.394, Q.406, I.409, N.410
- Chain F: R.322, E.323
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain F- Hydrogen bonds: C:N.410, F:R.322, F:R.322
EDO.14: 4 residues within 4Å:- Chain D: R.578, L.579, K.689, A.806
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.578, D:L.579
EDO.15: 5 residues within 4Å:- Chain D: K.407, G.408, Q.1228, E.1229, T.1230
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:G.408, D:T.1230, D:T.1230
EDO.16: 6 residues within 4Å:- Chain D: T.923, G.940, H.941, D.942, M.976, L.987
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:H.941
EDO.18: 4 residues within 4Å:- Chain C: Y.1012
- Chain D: V.592, S.628, R.630
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.628, D:S.628
EDO.24: 4 residues within 4Å:- Chain F: S.406, R.408, E.409, I.444
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:R.408
EDO.25: 6 residues within 4Å:- Chain F: W.287, R.290, Q.291, T.294
- Chain I: T.26
- Chain J: A.1
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:W.287, F:T.294
- 1 x RFP: RIFAMPICIN(Non-covalent)
RFP.5: 17 residues within 4Å:- Chain C: S.425, Q.426, S.428, Q.429, F.430, D.432, H.442, R.445, S.447, L.449, R.456, P.480, I.488, R.604, H.671
- Chain F: E.368
- Ligands: SO4.6
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:Q.429, C:D.432, C:L.449
- Hydrogen bonds: C:Q.426, C:Q.429, C:F.430, C:F.430, C:R.445, C:R.445, C:S.447
- 2 x ZN: ZINC ION(Non-covalent)
ZN.8: 6 residues within 4Å:- Chain D: C.890, R.962, C.967, S.969, C.974, C.977
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.890, D:C.967, D:C.974, D:C.977
ZN.9: 5 residues within 4Å:- Chain D: C.60, C.62, G.63, C.75, C.78
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.60, D:C.62, D:C.75, D:C.78
- 1 x GLU: GLUTAMIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peek, J. et al., Rifamycin congeners kanglemycins are active against rifampicin-resistant bacteria via a distinct mechanism. Nat Commun (2018)
- Release Date
- 2018-08-15
- Peptides
- DNA-directed RNA polymerase subunit alpha: ABK
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor SigA: F
Unknown Peptide: G
RNA polymerase-binding protein RbpA: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BK
TC
CD
DE
EF
FG
GH
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.05 Å
- Oligo State
- hetero-3-1-1-1-1-1-1-mer
- Ligands
- 13 x SO4: SULFATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x RFP: RIFAMPICIN(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 1 x GLU: GLUTAMIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peek, J. et al., Rifamycin congeners kanglemycins are active against rifampicin-resistant bacteria via a distinct mechanism. Nat Commun (2018)
- Release Date
- 2018-08-15
- Peptides
- DNA-directed RNA polymerase subunit alpha: ABK
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor SigA: F
Unknown Peptide: G
RNA polymerase-binding protein RbpA: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BK
TC
CD
DE
EF
FG
GH
J