- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.11 Å
- Oligo State
- hetero-3-1-1-1-1-1-1-mer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain C: R.1058, G.1060, E.1061, M.1062, E.1063
- Chain D: R.414
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.1058, C:R.1058, C:M.1062
EDO.7: 5 residues within 4Å:- Chain C: Q.406, I.409, N.410
- Chain F: R.319, R.322
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:Q.406, F:R.322
EDO.14: 5 residues within 4Å:- Chain D: R.578, L.579, K.689, G.805, A.806
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.578, D:L.579
EDO.15: 4 residues within 4Å:- Chain D: K.407, G.408, E.1229, T.1230
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.1229, D:T.1230, D:T.1230, D:T.1230
EDO.16: 6 residues within 4Å:- Chain D: T.923, G.940, H.941, D.942, M.976, L.987
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.940
EDO.18: 4 residues within 4Å:- Chain C: Y.1012
- Chain D: V.592, S.628, R.630
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.628, D:S.628, D:R.630, C:Y.1012
EDO.24: 3 residues within 4Å:- Chain F: S.406, R.408, E.409
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:S.406, F:E.409, F:E.409
- 1 x SRN: SORANGICIN A(Non-covalent)
SRN.5: 17 residues within 4Å:- Chain C: V.167, Q.426, Q.429, F.430, D.432, H.442, R.445, S.447, L.449, G.450, R.456, P.480, N.484, I.488, R.604, H.671
- Chain F: D.367
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:V.167, C:Q.426, C:F.430, C:F.430, C:D.432, C:L.449, C:I.488, C:I.488
- Hydrogen bonds: C:Q.426, C:Q.429, C:F.430, C:R.445, C:R.445
- Salt bridges: C:R.456
- 2 x ZN: ZINC ION(Non-covalent)
ZN.8: 5 residues within 4Å:- Chain D: C.890, R.962, C.967, C.974, C.977
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.890, D:C.967, D:C.974, D:C.977
ZN.9: 5 residues within 4Å:- Chain D: C.60, C.62, G.63, C.75, C.78
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.60, D:C.62, D:C.75, D:C.78
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lilic, M. et al., The antibiotic sorangicin A inhibits promoter DNA unwinding in a Mycobacterium tuberculosis rifampicin-resistant RNA polymerase. Proc.Natl.Acad.Sci.USA (2020)
- Release Date
- 2020-10-21
- Peptides
- DNA-directed RNA polymerase subunit alpha: ABK
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor SigA: F
unknown: G
RNA polymerase-binding protein RbpA: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BK
TC
CD
DE
EF
FG
GH
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.11 Å
- Oligo State
- hetero-3-1-1-1-1-1-1-mer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x SRN: SORANGICIN A(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lilic, M. et al., The antibiotic sorangicin A inhibits promoter DNA unwinding in a Mycobacterium tuberculosis rifampicin-resistant RNA polymerase. Proc.Natl.Acad.Sci.USA (2020)
- Release Date
- 2020-10-21
- Peptides
- DNA-directed RNA polymerase subunit alpha: ABK
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor SigA: F
unknown: G
RNA polymerase-binding protein RbpA: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BK
TC
CD
DE
EF
FG
GH
J