SMTL ID : 6cge.1

Crystal structure of human 17beta-HSD type 1 in ternary complex with PBRM and NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 17 residues within 4Å: Chain A: G.10, C.11, S.12, S.13, G.14, I.15, R.38, L.65, D.66, V.67, R.68, N.91, A.92, G.93, L.94, V.114, T.191 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.10, A:S.12, A:S.12, A:S.13, A:I.15, A:D.66, A:V.67, A:G.93, A:T.191 Water bridges: A:G.10, A:C.11, A:G.16, A:G.16, A:R.38, A:R.38 Salt bridges: A:R.38 NAP.3: 16 residues within 4Å: Chain B: G.10, C.11, S.12, S.13, G.14, I.15, R.38, L.65, D.66, V.67, R.68, A.92, G.93, L.94, V.114, T.191 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.10, B:S.12, B:S.12, B:S.12, B:S.13, B:I.15, B:D.66, B:D.66, B:V.67, B:G.93 Water bridges: B:G.10, B:C.11, B:G.16, B:R.38 Salt bridges: B:R.38

2 x F0D: 3-{[(14beta,16alpha,17alpha)-3-(2-bromoethyl)-17-hydroxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide(Covalent)

F0D.2: 20 residues within 4Å: Chain A: G.95, L.96, L.97, S.143, V.144, G.145, L.150, N.153, Y.156, C.186, G.187, P.188, L.198, Y.219, H.222, S.223, V.226, F.260, E.283, V.284 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.144, A:Y.156, A:Y.219, A:V.226, A:F.260, A:E.283, A:V.284 Hydrogen bonds: A:L.96, A:L.96, A:V.144, A:G.145, A:C.186 F0D.4: 18 residues within 4Å: Chain B: G.95, L.96, L.97, S.143, V.144, G.145, L.150, N.153, Y.156, C.186, G.187, P.188, Y.219, H.222, V.226, F.260, E.283, V.284 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.144, B:L.150, B:Y.156, B:Y.219, B:V.226, B:V.226, B:E.283, B:V.284 Hydrogen bonds: B:L.96, B:L.96, B:C.186 pi-Stacking: B:Y.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Combined Biophysical Chemistry Reveals a New Covalent Inhibitor with a Low-Reactivity Alkyl Halide. J Phys Chem Lett (2018)

Release Date

2019-01-16

Peptides

Estradiol 17-beta-dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estradiol 17-beta-dehydrogenase 1

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