SMTL ID : 6mne.1

CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1 COMPLEXED WITH ESTRONE AND NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 16 residues within 4Å: Chain A: G.10, C.11, S.12, S.13, G.14, I.15, R.38, L.65, D.66, V.67, R.68, A.92, G.93, L.94, V.114, T.191 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:S.12, A:S.13, A:S.13, A:I.15, A:R.38, A:D.66, A:D.66, A:V.67, A:G.93 Water bridges: A:G.10, A:C.11, A:C.11, A:G.16, A:R.38, A:N.91, A:N.91 Salt bridges: A:R.38 NAP.4: 16 residues within 4Å: Chain B: G.10, C.11, S.12, S.13, G.14, I.15, R.38, L.65, D.66, V.67, R.68, A.92, G.93, L.94, V.114, T.191 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.12, B:S.12, B:S.13, B:S.13, B:S.13, B:I.15, B:R.38, B:D.66, B:V.67, B:G.93 Water bridges: B:G.10, B:C.11, B:S.12, B:S.12, B:G.16, B:N.91, B:N.91 Salt bridges: B:R.38

2 x J3Z: (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one(Non-covalent)

J3Z.2: 9 residues within 4Å: Chain A: V.144, L.150, Y.219, H.222, S.223, F.260, M.280, E.283, V.284 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.144, A:L.150, A:L.150, A:F.260 J3Z.5: 13 residues within 4Å: Chain B: S.143, V.144, L.150, Y.156, Y.219, H.222, S.223, V.226, F.227, F.260, M.280, E.283, V.284 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.144, B:L.150, B:F.227, B:F.227, B:E.283, B:V.284 Hydrogen bonds: B:S.143, B:S.143, B:E.283

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: A.109, L.112, D.113, V.117 Chain B: A.109, L.112, V.117 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.109, A:D.113, A:D.113, A:R.121, B:A.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Crystal structures of human 17 beta-hydroxysteroid dehydrogenase type 1 complexed with estrone and NADP+reveal the mechanism of substrate inhibition. Febs J. (2019)

Release Date

2019-04-03

Peptides

Estradiol 17-beta-dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estradiol 17-beta-dehydrogenase 1

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