SMTL ID : 7x3z.1

Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 1 complexed with estrone and NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 12 residues within 4Å: Chain A: G.10, S.12, S.13, R.38, L.65, D.66, V.67, R.68, A.92, G.93, L.94, V.114 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.10, A:S.12, A:S.12, A:S.13, A:S.13, A:D.66, A:D.66, A:V.67, A:G.93 Water bridges: A:I.15, A:R.38, A:R.38, A:R.38, A:N.91 NAD.2: 12 residues within 4Å: Chain B: G.10, S.12, S.13, R.38, L.65, D.66, V.67, R.68, A.92, G.93, L.94, V.114 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.10, B:S.12, B:S.12, B:S.12, B:S.13, B:R.38, B:D.66, B:V.67, B:G.93 Water bridges: B:G.10, B:C.11, B:C.11, B:N.91 pi-Cation interactions: B:R.38

1 x J3Z: (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one(Non-covalent)

J3Z.3: 11 residues within 4Å: Chain B: V.144, L.150, Y.156, P.188, H.222, S.223, V.226, F.227, F.260, E.283, V.284 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.144, B:L.150, B:V.226, B:F.227, B:F.260, B:F.260 Hydrogen bonds: B:Y.156, B:E.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., New insights into the substrate inhibition of human 17 beta-hydroxysteroid dehydrogenase type 1. J.Steroid Biochem.Mol.Biol. (2023)

Release Date

2023-01-25

Peptides

17-beta-hydroxysteroid dehydrogenase type 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

17-beta-hydroxysteroid dehydrogenase type 1

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