SMTL ID : 6cim.1

Pre-Reaction Complex, RAG1(E962Q)/2-nicked/intact 12/23RSS complex in Mn2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-2-2-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.344, C.347, H.554, H.559 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.344, A:C.347, A:H.554, A:H.559 ZN.3: 4 residues within 4Å: Chain C: C.344, C.347, H.554, H.559 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.344, C:C.347, C:H.554, C:H.559

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: D.217, E.279, D.325 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.217, A:D.325 MN.4: 3 residues within 4Å: Chain C: D.217, E.279, D.325 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.217, C:D.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.S. et al., Cracking the DNA Code for V(D)J Recombination. Mol. Cell (2018)

Release Date

2018-04-25

Peptides

V(D)J recombination-activating protein 1: AC
V(D)J recombination-activating protein 2: BD
High mobility group protein B1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
N

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

High mobility group protein B1

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