SMTL ID : 6cs8.1

High resolution crystal structure of FtsY-NG domain of E. coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

4 x F9Y: 1H-indole-6-carbonitrile(Non-covalent)

F9Y.1: 9 residues within 4Å: Chain A: T.113, T.114, I.116, G.117, K.118, A.142, Q.145, L.146, W.149 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.149, A:W.149 Hydrogen bonds: A:G.117, A:K.118 Water bridges: A:L.146, A:W.149 F9Y.2: 6 residues within 4Å: Chain A: Q.160, S.168, F.171, D.172, V.209, K.212 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.171, A:F.171, A:K.212 F9Y.3: 6 residues within 4Å: Chain B: Q.160, S.168, F.171, D.172, V.209, K.212 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.212 Water bridges: B:Q.160 pi-Stacking: B:F.171, B:F.171 F9Y.4: 7 residues within 4Å: Chain B: T.113, T.114, G.117, K.118, Q.145, L.146, W.149 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.113, B:Q.145, B:W.149 Water bridges: B:W.149

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain B: D.89, E.90, P.91, F.289, K.290, A.291 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faoro, C. et al., Discovery of fragments that target key interactions in the signal recognition particle (SRP) as potential leads for a new class of antibiotics. PLoS ONE (2018)

Release Date

2018-08-22

Peptides

Signal recognition particle receptor FtsY: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Signal recognition particle receptor FtsY

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