SMTL ID : 6czv.1

BRD4(BD1) complexed with 2759

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x FOY: 1-benzyl-5-(3,5-dimethyl-1,2-oxazol-4-yl)pyridin-2(1H)-one(Non-covalent)

FOY.1: 10 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, N.99, I.105, M.108 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:P.41, A:F.42, A:L.51, A:L.53 Hydrogen bonds: A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: K.16, R.17, Q.18, L.22, R.72, L.73, N.76, Y.77, Y.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.17, A:R.17, A:R.72, A:Y.77, A:Y.78 EDO.3: 2 residues within 4Å: Chain A: H.36, Q.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kharenko, O.A. et al., Design and Characterization of Novel Covalent Bromodomain and Extra-Terminal Domain (BET) Inhibitors Targeting a Methionine. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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