SMTL ID : 6d1z.1

Crystal structure of Tyrosine-protein kinase receptor in complex with 5-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4(3H)-one Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x FQD: 5-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4(3H)-one(Non-covalent)

FQD.1: 5 residues within 4Å: Chain A: L.36, K.37, W.38, E.39, F.49 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.39, A:F.49 Hydrogen bonds: A:E.39 Water bridges: A:W.38 pi-Stacking: A:W.38, A:W.38

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.40, G.119, D.120, L.181, F.193, M.195 No protein-ligand interaction detected (PLIP)

1 x FQM: 5-{[5-(6-aminopyridin-2-yl)-2-chlorobenzene-1-carbonyl]amino}-1-phenyl-1H-pyrazole-3-carboxamide(Non-covalent)

FQM.3: 16 residues within 4Å: Chain A: S.8, G.9, L.10, K.68, E.84, L.88, I.96, V.97, M.111, F.113, F.170, H.172, G.191, D.192, G.194, R.197 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.10, A:L.10, A:K.68, A:L.88, A:I.96, A:V.97, A:F.113, A:F.170 Hydrogen bonds: A:G.9, A:L.10, A:D.192, A:D.192, A:D.192, A:R.197 Water bridges: A:S.8, A:D.192, A:G.194 pi-Cation interactions: A:K.68 Halogen bonds: A:H.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagal, S.K. et al., Discovery of Allosteric, Potent, Subtype Selective, and Peripherally Restricted TrkA Kinase Inhibitors. J. Med. Chem. (2019)

Release Date

2018-05-02

Peptides

High affinity nerve growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity nerve growth factor receptor

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