SMTL ID : 6dfg.1

BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-mer
Ligands
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Steichen, J.M. et al., A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses. Science (2019)
Release Date
2019-11-06
Peptides
Envelope glycoprotein gp160: AEI
Envelope glycoprotein gp160: BFJ
mature BG18 fragment antigen binding heavy chain: CGK
mature BG18 fragment antigen binding light chain: DHL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
E
C
I
D
B
B
F
E
J
F
C
H
G
G
K
I
D
L
H
J
L
K

Envelope glycoprotein gp160

Toggle Identical (AEI)

Envelope glycoprotein gp160

Toggle Identical (BFJ)

mature BG18 fragment antigen binding heavy chain

Toggle Identical (CGK)

mature BG18 fragment antigen binding light chain

Toggle Identical (DHL)

Related Entries With Identical Sequence

6nf5.1 | 6nfc.1 | 7t73.1 | 7t75.1 | 7t75.2 | 7t75.3 | 7t76.1 | 7t77.1 | 7t9a.1 | 8f92.1 | 8f9g.1 | 8f9m.1 | 8t4k.1