SMTL ID : 6nfc.1

BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP42 fragmentantigen binding and base-binding RM20A3 fragment antigen binding

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-1-1-mer
Ligands
15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
39 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Steichen, J.M. et al., A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses. Science (2019)
Release Date
2019-11-06
Peptides
base-binding RM20A3 fragment antigen binding heavy chain: AGM
base-binding RM20A3 fragment antigen binding light chain: BHN
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120: CIK
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41: DJL
BG18-like precursor HMP42 fragment antigen binding heavy chain: E
BG18-like precursor HMP42 fragment antigen binding light chain: F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
G
J
M
K
B
D
H
M
N
N
C
A
I
E
K
F
D
B
J
G
L
I
E
H
F
L

base-binding RM20A3 fragment antigen binding heavy chain

Toggle Identical (AGM)

base-binding RM20A3 fragment antigen binding light chain

Toggle Identical (BHN)

HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120

Toggle Identical (CIK)

HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41

Toggle Identical (DJL)

BG18-like precursor HMP42 fragment antigen binding heavy chain

BG18-like precursor HMP42 fragment antigen binding light chain

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