SMTL ID : 8f9m.1

HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized wild type mice, and NHP monoclonal Fab RM20A3

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-1-1-mer
Ligands
7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
42 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Xie, Z. et al., mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies. Science (2024)
Release Date
2024-05-15
Peptides
BG505_MD64_N332-GT5 gp120: AEI
RM20A3 Fab Heavy Chain: BFJ
RM20A3 Fab Light Chain: CGK
BG505_MD64_N332-GT5 gp41: DHL
V3-glycan epitope polyclonal Fab heavy chain: M
V3-glycan epitope polyclonal Fab light chain: N
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
E
E
I
F
B
C
F
J
J
K
C
D
G
M
K
N
D
B
H
G
L
I
M
H
N
L

BG505_MD64_N332-GT5 gp120

Toggle Identical (AI)

RM20A3 Fab Heavy Chain

Toggle Identical (BFJ)

RM20A3 Fab Light Chain

Toggle Identical (CGK)

BG505_MD64_N332-GT5 gp41

Toggle Identical (DHL)

V3-glycan epitope polyclonal Fab heavy chain

V3-glycan epitope polyclonal Fab light chain

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