SMTL ID : 6dkg.1

Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 13b.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x 22L: 5-phenylthieno[2,3-d]pyrimidin-4(3H)-one(Non-covalent)

22L.1: 5 residues within 4Å: Chain A: L.36, K.37, W.38, E.39, F.49 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.38 Hydrogen bonds: A:E.39 pi-Stacking: A:W.38, A:W.38

1 x GO7: 2-{[(3R,4S)-3-fluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}piperidin-4-yl]oxy}-4-(2-hydroxy-2-methylpropoxy)benzamide(Non-covalent)

GO7.2: 22 residues within 4Å: Chain A: L.40, G.41, V.48, A.66, L.88, L.91, I.96, V.97, F.113, E.114, Y.115, M.116, G.119, D.120, F.170, H.172, L.181, I.190, G.191, D.192, F.193, Y.200 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.40, A:V.48, A:L.88, A:V.97, A:F.113, A:L.181, A:L.181 Hydrogen bonds: A:E.114, A:M.116, A:D.192 Halogen bonds: A:I.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagal, S.K. et al., Discovery of Potent, Selective, and Peripherally Restricted Pan-Trk Kinase Inhibitors for the Treatment of Pain. J. Med. Chem. (2018)

Release Date

2018-07-11

Peptides

High affinity nerve growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity nerve growth factor receptor

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