SMTL ID : 6dld.1 (1 other biounit)

Crystal structure of IgLON5/NEGR1 heterodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 9 residues within 4Å: Chain A: N.48, R.49, N.51, D.63, R.65, I.80, G.86, D.87, Y.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.65

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.30, R.67, T.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.30 NAG.3: 2 residues within 4Å: Chain A: D.234, N.269 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain A: S.18, A.20, N.22, Y.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.18, A:A.20, A:A.20 NAG.5: 2 residues within 4Å: Chain A: N.118, I.119 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain B: N.129, Y.165 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.165 Hydrogen bonds: B:N.129 NAG.7: 2 residues within 4Å: Chain B: T.270, N.281 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.270 Hydrogen bonds: B:N.281 NAG.8: 6 residues within 4Å: Chain B: N.47, T.85, D.86, D.87, G.88, Y.90 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.86, B:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranaivoson, F.M. et al., Structure of a heterodimer of neuronal cell surface proteins. Structure (2019)

Release Date

2019-04-10

Peptides

IgLON family member 5: A
Neuronal growth regulator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IgLON family member 5

Neuronal growth regulator 1

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