SMTL ID : 6dle.1

Crystal structure of IgLON5 homodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.99 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain B: N.48, R.49, N.51, R.65, G.86, D.87, E.88, G.89, Y.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.65, B:D.87

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 8 residues within 4Å: Chain A: N.48, R.49, N.51, R.65, I.80, G.86, D.87, Y.91 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.80 Hydrogen bonds: A:N.51, A:Y.91 NAG.3: 2 residues within 4Å: Chain A: N.30, T.81 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: A.20, D.21, N.22 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.21 Hydrogen bonds: A:A.20, A:N.22 NAG.5: 1 residues within 4Å: Chain B: N.22 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain B: N.30, R.67 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain B: N.261 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: D.234, N.269 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranaivoson, F.M. et al., Structure of a heterodimer of neuronal cell surface proteins. Structure (2019)

Release Date

2019-04-10

Peptides

IgLON family member 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IgLON family member 5

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