SMTL ID : 6dld.2 (1 other biounit)

Crystal structure of IgLON5/NEGR1 heterodimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: N.48, D.63, R.65, I.80, G.86, D.87, Y.91 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.80 Hydrogen bonds: A:D.63, A:D.63, A:D.63, A:R.65, A:Y.91 NAG.2: 2 residues within 4Å: Chain A: N.30, T.81 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: V.117, N.118 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: D.234, N.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.234 NAG.5: 2 residues within 4Å: Chain A: A.20, N.22 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.20 NAG.6: 6 residues within 4Å: Chain B: N.47, R.48, V.65, T.85, D.86, Y.90 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.64, B:D.86, B:D.86, B:D.86, B:Y.90 NAG.7: 2 residues within 4Å: Chain B: N.129, Y.165 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.129 NAG.8: 1 residues within 4Å: Chain B: N.281 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranaivoson, F.M. et al., Structure of a heterodimer of neuronal cell surface proteins. Structure (2019)

Release Date

2019-04-10

Peptides

IgLON family member 5: A
Neuronal growth regulator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

IgLON family member 5

Neuronal growth regulator 1

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