- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.69 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x MLI: MALONATE ION(Non-functional Binders)
- 17 x FMT: FORMIC ACID(Non-functional Binders)
FMT.2: 4 residues within 4Å:- Chain A: R.223, G.258, E.259, A.262
Ligand excluded by PLIPFMT.3: 7 residues within 4Å:- Chain A: Y.30, E.57, I.72, M.106, Y.181, I.237
- Ligands: MLI.1
Ligand excluded by PLIPFMT.4: 4 residues within 4Å:- Chain A: Y.35, T.71, R.74, A.75
Ligand excluded by PLIPFMT.5: 3 residues within 4Å:- Chain A: A.208, S.210, D.211
Ligand excluded by PLIPFMT.8: 2 residues within 4Å:- Chain B: R.77, Q.80
Ligand excluded by PLIPFMT.9: 4 residues within 4Å:- Chain B: A.44, K.47, E.48, R.114
Ligand excluded by PLIPFMT.10: 3 residues within 4Å:- Chain B: R.113, R.114
- Ligands: FMT.12
Ligand excluded by PLIPFMT.11: 2 residues within 4Å:- Chain B: Q.80, S.84
Ligand excluded by PLIPFMT.12: 3 residues within 4Å:- Chain B: L.110, R.113
- Ligands: FMT.10
Ligand excluded by PLIPFMT.22: 3 residues within 4Å:- Chain D: G.141, L.142, D.143
Ligand excluded by PLIPFMT.23: 3 residues within 4Å:- Chain D: K.47, E.48, R.114
Ligand excluded by PLIPFMT.24: 3 residues within 4Å:- Chain C: Q.144
- Chain D: S.23, F.297
Ligand excluded by PLIPFMT.25: 3 residues within 4Å:- Chain B: R.355, F.404
- Chain D: L.165
Ligand excluded by PLIPFMT.26: 7 residues within 4Å:- Chain D: G.273, D.274, R.280, H.312, S.313, I.314, D.343
Ligand excluded by PLIPFMT.27: 4 residues within 4Å:- Chain B: R.164, L.165
- Chain D: G.351, R.355
Ligand excluded by PLIPFMT.28: 6 residues within 4Å:- Chain D: T.97, Q.128, R.162, R.392, D.394, K.395
Ligand excluded by PLIPFMT.29: 3 residues within 4Å:- Chain D: E.378, L.379, G.380
Ligand excluded by PLIP- 2 x P1T: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID(Non-covalent)
P1T.6: 24 residues within 4Å:- Chain B: S.99, H.100, K.101, T.124, G.125, A.126, G.127, Q.128, H.129, L.180, T.204, C.244, V.245, G.246, G.247, G.248, S.249, N.250, G.317, L.318, A.362, E.364, S.390, G.391
25 PLIP interactions:25 interactions with chain B- Hydrophobic interactions: B:L.180, B:A.362, B:E.364
- Hydrogen bonds: B:K.101, B:G.125, B:A.126, B:G.127, B:Q.128, B:H.129, B:G.246, B:G.247, B:G.248, B:S.249, B:N.250, B:N.250, B:S.390
- Water bridges: B:K.101, B:T.204, B:T.204, B:G.248, B:A.251
- Salt bridges: B:H.100, B:K.101, B:K.101
- pi-Stacking: B:H.100
P1T.18: 23 residues within 4Å:- Chain D: H.100, K.101, T.124, G.125, A.126, G.127, Q.128, H.129, L.180, T.204, C.244, V.245, G.246, G.247, G.248, S.249, N.250, G.317, L.318, A.362, E.364, S.390, G.391
23 PLIP interactions:23 interactions with chain D- Hydrophobic interactions: D:L.180, D:A.362, D:E.364
- Hydrogen bonds: D:K.101, D:G.125, D:A.126, D:G.127, D:Q.128, D:H.129, D:G.246, D:G.247, D:G.248, D:S.249, D:N.250, D:N.250, D:S.390
- Water bridges: D:E.123, D:C.244, D:A.251
- Salt bridges: D:H.100, D:K.101, D:K.101
- pi-Stacking: D:H.100
- 4 x CS: CESIUM ION(Non-covalent)
CS.7: 6 residues within 4Å:- Chain B: V.245, G.246, A.282, T.284, Y.320, G.322
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.284
CS.19: 6 residues within 4Å:- Chain D: V.245, G.246, A.282, T.284, Y.320, G.322
No protein-ligand interaction detected (PLIP)CS.20: 2 residues within 4Å:- Chain D: L.142, G.167
No protein-ligand interaction detected (PLIP)CS.21: 4 residues within 4Å:- Chain B: G.67, P.69
- Chain D: G.67, P.69
No protein-ligand interaction detected (PLIP)- 2 x HDJ: (2R,3S,4R)-3-(2',6'-difluoro-4'-methyl[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile(Non-covalent)
HDJ.13: 18 residues within 4Å:- Chain A: D.64, G.66, M.67, Y.108, D.136
- Chain B: V.30, L.34, I.184, N.185, F.188, Y.200, F.202, G.207, P.208, F.211, F.293, H.294, G.295
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:V.30, B:F.188, B:F.188, B:Y.200, B:F.202, B:P.208, B:F.211
- pi-Stacking: B:F.188, B:F.202
- Hydrogen bonds: A:D.64
HDJ.30: 17 residues within 4Å:- Chain C: D.64, M.67, Y.108, D.136
- Chain D: V.30, L.34, I.184, N.185, F.188, Y.200, F.202, G.207, P.208, F.211, F.293, H.294, G.295
11 PLIP interactions:8 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:F.188, D:F.188, D:Y.200, D:F.202, D:P.208, D:F.211
- pi-Stacking: D:F.188, D:F.202
- Hydrogen bonds: C:D.64, C:M.67
- Water bridges: C:D.136
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.14: 4 residues within 4Å:- Chain A: Q.144
- Chain B: S.23, Y.29, F.297
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.297
- Hydrogen bonds: B:S.23
ACT.15: 4 residues within 4Å:- Chain B: G.20, G.24, W.25, E.332
2 PLIP interactions:2 interactions with chain B- Water bridges: B:G.20, B:S.23
- 2 x MLA: MALONIC ACID(Non-covalent)
MLA.16: 5 residues within 4Å:- Chain B: P.262, G.263, R.265, G.334, R.335
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:R.265
- Water bridges: B:R.335
- Salt bridges: B:R.335
MLA.32: 4 residues within 4Å:- Chain D: S.79, Q.80, S.84, R.381
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:S.79, D:S.84
- Water bridges: D:S.79, D:Q.80
- Salt bridges: D:R.381
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chang, C. et al., Crystal structure of tryptophan synthase from M. tuberculosis - closed form with BRD6309 bound. To be Published
- Release Date
- 2018-07-11
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GC
EB
HD
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.69 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x MLI: MALONATE ION(Non-functional Binders)
- 17 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x P1T: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID(Non-covalent)
- 4 x CS: CESIUM ION(Non-covalent)
- 2 x HDJ: (2R,3S,4R)-3-(2',6'-difluoro-4'-methyl[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x MLA: MALONIC ACID(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chang, C. et al., Crystal structure of tryptophan synthase from M. tuberculosis - closed form with BRD6309 bound. To be Published
- Release Date
- 2018-07-11
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GC
EB
HD
F