- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.57 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 1 x MLA: MALONIC ACID(Non-covalent)
- 5 x ACT: ACETATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 9 residues within 4Å:- Chain A: Y.30, V.60, P.61, Y.62, P.65, D.68, T.76, M.106, Y.108
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.30, A:Y.30, A:Y.62, A:Y.62, A:T.76
EDO.14: 3 residues within 4Å:- Chain B: P.262, G.263, R.265
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.265
- Water bridges: B:R.335
EDO.16: 6 residues within 4Å:- Chain C: Y.181, T.185, G.217, G.219, G.239, S.240
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.185, C:G.239, C:S.240
- Water bridges: C:L.218
EDO.23: 4 residues within 4Å:- Chain D: Q.128, N.159, R.162, K.395
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.162
EDO.24: 4 residues within 4Å:- Chain D: P.262, G.263, V.264, R.265
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.265
- Water bridges: D:R.335
- 2 x HDJ: (2R,3S,4R)-3-(2',6'-difluoro-4'-methyl[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile(Non-covalent)
HDJ.4: 17 residues within 4Å:- Chain A: D.64, G.66, M.67, Y.108, D.136
- Chain B: V.30, P.31, L.34, I.184, N.185, F.188, F.202, G.207, P.208, F.211, H.294, G.295
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:F.188, B:F.202, B:P.208, B:F.211
- pi-Stacking: B:F.188, B:F.202
- Hydrogen bonds: A:D.64, A:G.66, A:M.67
HDJ.18: 17 residues within 4Å:- Chain C: D.64, G.66, M.67, Y.108, D.136
- Chain D: V.30, P.31, L.34, I.184, N.185, F.188, Y.200, F.202, P.208, F.211, H.294, G.295
10 PLIP interactions:8 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.188, D:Y.200, D:Y.200, D:F.202, D:P.208, D:F.211
- pi-Stacking: D:F.188, D:F.202
- Hydrogen bonds: C:D.64, C:G.66
- 1 x MLT: D-MALATE(Non-covalent)
- 11 x FMT: FORMIC ACID(Non-functional Binders)
FMT.6: 4 residues within 4Å:- Chain B: G.351, R.355, F.404
- Chain D: L.165
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.351, B:R.355
FMT.8: 7 residues within 4Å:- Chain B: E.74, A.75, T.76, S.79, A.85, R.86, I.87
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.74, B:I.87
FMT.10: 3 residues within 4Å:- Chain A: Q.144
- Chain B: S.23, F.297
No protein-ligand interaction detected (PLIP)FMT.11: 8 residues within 4Å:- Chain B: V.245, G.246, A.282, T.284, L.318, Y.320, G.322, V.323
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.284
FMT.12: 3 residues within 4Å:- Chain B: K.47, E.48, R.114
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.48
FMT.13: 4 residues within 4Å:- Chain B: H.11, E.326, W.329, L.330
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.11
FMT.19: 4 residues within 4Å:- Chain D: L.237, P.238, D.239, G.263
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.239
FMT.20: 3 residues within 4Å:- Chain D: Y.45, L.55, D.217
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.45, D:Y.45
FMT.21: 3 residues within 4Å:- Chain D: K.47, E.48, R.114
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.47, D:E.48, D:E.48
FMT.22: 5 residues within 4Å:- Chain B: P.69, P.71
- Chain D: A.63, G.67, R.68
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.67
FMT.25: 6 residues within 4Å:- Chain D: A.36, V.37, E.40, K.117, A.195, D.196
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.36, D:K.117
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chang, C. et al., Crystal structure of tryptophan synthase from M. tuberculosis - closed form with BRD6309 bound. To be Published
- Release Date
- 2018-08-08
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
GB
BD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.57 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 1 x MLA: MALONIC ACID(Non-covalent)
- 5 x ACT: ACETATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x HDJ: (2R,3S,4R)-3-(2',6'-difluoro-4'-methyl[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile(Non-covalent)
- 1 x MLT: D-MALATE(Non-covalent)
- 11 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chang, C. et al., Crystal structure of tryptophan synthase from M. tuberculosis - closed form with BRD6309 bound. To be Published
- Release Date
- 2018-08-08
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
GB
BD
H