- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x OS5: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-benzyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-ol(Non-covalent)
OS5.8: 22 residues within 4Å:- Chain A: A.24, M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223
- Chain B: L.119, F.122, H.124, P.130, E.131
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.67, B:P.130, B:E.131
- Hydrogen bonds: A:V.169, A:E.190, A:D.213, A:D.213
- Water bridges: A:R.209
- Salt bridges: A:E.28, A:E.190
OS5.16: 22 residues within 4Å:- Chain A: L.119, F.122, H.124, P.130, E.131
- Chain B: A.24, M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:I.67, A:P.130, A:E.131
- Hydrogen bonds: B:V.169, B:E.190, B:D.213, B:D.213
- Salt bridges: B:E.28, B:E.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harijan, R.K. et al., Selective Inhibitors of Helicobacter pylori Methylthioadenosine Nucleosidase and Human Methylthioadenosine Phosphorylase. J. Med. Chem. (2019)
- Release Date
- 2019-03-20
- Peptides
- 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x OS5: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-benzyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-ol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harijan, R.K. et al., Selective Inhibitors of Helicobacter pylori Methylthioadenosine Nucleosidase and Human Methylthioadenosine Phosphorylase. J. Med. Chem. (2019)
- Release Date
- 2019-03-20
- Peptides
- 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A