SMTL ID : 6e54.1

Crystal structure of LpxC from Pseudomonas aeruginosa in complex with ligand PT802

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x HUM: (2S)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide(Non-covalent)

HUM.1: 23 residues within 4Å: Chain A: L.19, H.20, M.63, S.64, E.78, H.79, T.191, F.192, G.193, F.194, M.195, I.198, L.201, G.210, S.211, A.215, V.217, L.224, H.238, D.242, H.265 Ligands: JCG.2, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.198, A:I.198, A:L.201, A:A.215, A:V.217, A:L.224 Hydrogen bonds: A:M.63, A:E.78

1 x JCG: (2R)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide(Non-covalent)

JCG.2: 22 residues within 4Å: Chain A: L.19, H.20, M.63, E.78, H.79, T.191, F.192, G.193, F.194, M.195, I.198, L.201, G.210, A.215, V.217, L.224, H.238, K.239, D.242, H.265 Ligands: HUM.1, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.198, A:I.198, A:L.201, A:A.215, A:V.217, A:L.224 Hydrogen bonds: A:M.63, A:E.78

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: H.79, T.191, H.238, D.242 Ligands: HUM.1, JCG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.79, A:H.238, A:D.242, A:D.242

2 x CA: CALCIUM ION(Non-functional Binders)

CA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: G.264, A.266, L.267 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: R.42, V.72, K.73, S.99 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delker, S.L. et al., Crystal structure of LpxC from Pseudomonas aeruginosa in complex with ligand PT802. to be published

Release Date

2019-06-26

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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