SMTL ID : 6ej9.1

Human Xylosyltransferase 1 in complex with peptide QEPEGSGGGQGG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

hetero-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: W.184, S.367, P.368, R.390, K.391 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.367 Salt bridges: A:R.390, A:K.391 PO4.2: 6 residues within 4Å: Chain A: G.128, R.129, R.155, S.156, N.157, Y.158 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.128, A:R.155, A:S.156, A:S.156 Water bridges: A:R.129, A:Y.158, A:Y.158 Salt bridges: A:R.129

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: S.167, Y.170, S.171, V.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.167, A:V.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Briggs, D.C. et al., Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1. Structure (2018)

Release Date

2018-05-02

Peptides

Xylosyltransferase 1: A
Protein AMBP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Xylosyltransferase 1

Protein AMBP

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