SMTL ID : 6foa.1

Human Xylosyltransferase 1 apo structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: P.568, N.569 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.569

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: S.167, Y.170, S.171, V.173 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.167

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: W.184, Y.357, S.367, P.368, R.390, K.391 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.184, A:Y.357, A:Y.357 Water bridges: A:W.287, A:R.390, A:R.390 Salt bridges: A:R.390, A:K.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Briggs, D.C. et al., Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1. Structure (2018)

Release Date

2018-05-02

Peptides

Xylosyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Xylosyltransferase 1

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