SMTL ID : 6emh.4 (3 other biounits)

Crystal structure of JNK3 in complex with a pyridinylimidazole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: E.207, N.208, S.314, V.315 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: V.121, M.124, L.134, V.162, C.166 No protein-ligand interaction detected (PLIP)

1 x BGE: 4-(4-methyl-1~{H}-imidazol-5-yl)-~{N}-(4-morpholin-4-ylphenyl)pyridin-2-amine(Non-covalent)

BGE.3: 12 residues within 4Å: Chain A: I.35, V.43, A.56, M.111, E.112, L.113, M.114, D.115, A.116, N.117, Q.120, L.171 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.35, A:V.43, A:A.56, A:L.171 Hydrogen bonds: A:M.114, A:M.114

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: K.143, D.316 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.143, A:K.143 EDO.5: 2 residues within 4Å: Chain A: Q.65, N.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.66 Water bridges: A:Q.65

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: P.309, A.310, K.311, R.312, I.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.312 Water bridges: A:D.317 GOL.7: 2 residues within 4Å: Chain A: N.261, N.265 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ansideri, F. et al., Structural Optimization of a Pyridinylimidazole Scaffold: Shifting the Selectivity from p38 alpha Mitogen-Activated Protein Kinase to c-Jun N-Terminal Kinase 3. ACS Omega (2018)

Release Date

2018-08-08

Peptides

Mitogen-activated protein kinase 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Mitogen-activated protein kinase 10

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