SMTL ID : 6f1u.1

N terminal region of dynein tail domains in complex with dynactin filament and BICDR-1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-1-1-1-3-1-2-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 15 residues within 4Å: Chain A: N.16, G.17, S.18, G.19, V.20, K.22, G.161, D.162, K.215, K.218, E.219, G.303, S.304, L.306, F.307 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.16, A:S.18, A:G.19, A:V.20, A:D.162, A:D.162, A:K.218, A:E.219, A:G.303 Salt bridges: A:K.22, A:K.22 pi-Stacking: A:F.307 ADP.2: 16 residues within 4Å: Chain B: G.17, S.18, G.19, V.20, K.22, S.160, G.161, D.162, K.218, E.219, G.302, G.303, S.304, L.306, F.307, L.337 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.18, B:G.19, B:V.20, B:D.162, B:D.162, B:D.162, B:K.218, B:G.303, B:S.304 Salt bridges: B:K.22, B:K.22 ADP.3: 16 residues within 4Å: Chain C: G.17, V.20, K.22, S.160, G.161, D.162, G.187, K.215, K.218, E.219, G.302, G.303, S.304, L.306, F.307, L.337 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.18, C:D.162, C:D.162, C:D.162, C:K.215, C:G.303, C:S.304, C:L.306 Salt bridges: C:K.22, C:K.22 pi-Stacking: C:F.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Urnavicius, L. et al., Cryo-EM shows how dynactin recruits two dyneins for faster movement. Nature (2018)

Release Date

2018-01-17

Peptides

ARP1 actin related protein 1 homolog A: ABC
Capping protein (Actin filament) muscle Z-line, alpha 1: D
F-actin capping protein beta subunit: E
Dynactin subunit 2: F
Dynactin subunit 2: G
Cytoplasmic dynein 1 heavy chain 1: HIJ
Cytoplasmic dynein 1 intermediate chain 2: K
BICD family-like cargo adapter 1: LM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

D
K

E
L

F
c

G
d

H
f

I
m

J
n

K
h

L
X

M
x

ARP1 actin related protein 1 homolog A

Capping protein (Actin filament) muscle Z-line, alpha 1

F-actin capping protein beta subunit

Dynactin subunit 2

Dynactin subunit 2

Cytoplasmic dynein 1 heavy chain 1

Cytoplasmic dynein 1 intermediate chain 2

BICD family-like cargo adapter 1

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