- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-8-1-1-1-1-4-2-1-1-2-1-2-4-4-mer
- Ligands
- 9 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.8: 18 residues within 4Å:- Chain H: D.11, G.13, S.14, G.15, M.16, K.18, Q.137, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
16 PLIP interactions:16 interactions with chain H- Hydrogen bonds: H:S.14, H:G.15, H:M.16, H:Q.137, H:D.157, H:D.157, H:D.157, H:K.213, H:E.214, H:G.302, H:K.336
- Salt bridges: H:K.18, H:K.18, H:K.18, H:K.336
- pi-Stacking: H:Y.306
- 3 x ZN: ZINC ION(Non-covalent)
ZN.11: 5 residues within 4Å:- Chain V: C.30, C.33, R.37, Q.286, C.287
3 PLIP interactions:3 interactions with chain V- Metal complexes: V:C.30, V:C.33, V:C.287
ZN.12: 4 residues within 4Å:- Chain V: C.51, C.54, C.70, C.73
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:C.51, V:C.54, V:C.70, V:C.73
ZN.13: 6 residues within 4Å:- Chain V: C.76, C.79, M.80, H.81, C.111, C.114
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:C.76, V:C.79, V:C.111, V:C.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rao, Q. et al., Structure of dynein-dynactin on microtubules. To Be Published
- Release Date
- 2025-09-10
- Peptides
- Alpha-centractin: ABCDEFGI
Actin, cytoplasmic 1: H
Actin-related protein 10: J
F-actin-capping protein subunit alpha-1: K
F-actin-capping protein subunit beta: L
Dynactin subunit 2: MNPQ
Dynactin subunit 3: OR
Dynactin subunit 6: S
Dynactin subunit 5: T
Dynactin subunit 1: UW
Dynactin subunit 4: V
Trafficking protein, kinesin binding 2: XY
Cytoplasmic dynein 1 heavy chain 1: Z034
Cytoplasmic dynein 1 intermediate chain 2: 1256 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GI
IH
HJ
JK
KL
LM
MN
NP
PQ
QO
OR
RS
UT
VU
WW
ZV
YX
aY
bZ
e0
f3
m4
n1
g2
h5
o6
p
SMTL ID : 9dgv.1
structure of dynactin, dynein tail with TRAK2 from dynein-dynactin-TRAK2 on microtubules
Alpha-centractin
Toggle Identical (ABDEFGI)Actin, cytoplasmic 1
Actin-related protein 10
F-actin-capping protein subunit alpha-1
F-actin-capping protein subunit beta
Dynactin subunit 2
Dynactin subunit 3
Dynactin subunit 6
Dynactin subunit 5
Dynactin subunit 1
Dynactin subunit 4
Trafficking protein, kinesin binding 2
Cytoplasmic dynein 1 heavy chain 1
Cytoplasmic dynein 1 intermediate chain 2
Toggle Identical (1256)Related Entries With Identical Sequence
2oan.1 | 2oan.2 | 2oan.3 | 3u4l.1 | 5adx.1 | 5nw4.1 | 6anu.1 | 6f1t.1 | 6f1u.1 | 6f38.1 | 6f3a.1 | 6ltj.1 | 6znl.1 | 6znm.1 | 6znn.1 | 6zno.1 | 6zo4.1 | 7ccc.1 | 7pdz.1 | 7qj5.1 | 7qj6.1 | 7qj7.1 | 7qj8.1 | 7qj9.1 | 7qja.1 | 7qjb.1 | 7qjc.1 | 7vdv.1 | 7y8r.1 | 7z8f.1 more...less...7z8i.1 | 7z8k.1 | 7z8m.1 | 7ztc.1 | 7ztd.1 | 8iah.1 | 8iai.1 | 8ib2.1 | 8ib8.1 | 8oi6.1 | 8p94.1 | 8pqw.1 | 8pqz.1 | 8pr0.1 | 8pr4.1 | 8ptk.1 | 8qr1.1 | 8vrd.1 | 8vrj.1 | 8vrk.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xvg.1 | 8xvt.1 | 9b2z.1 | 9b7j.1 | 9b85.1 | 9c21.1 | 9c57.1 | 9c62.1 | 9c6n.1 | 9cac.1 | 9cae.1 | 9dgp.1 | 9dgq.1 | 9dgr.1 | 9dgs.1 | 9dgt.1 | 9dgu.1 | 9gxi.1 | 9i2b.1 | 9qvm.1 | 9qvn.1