SMTL ID : 9dgr.1

Composite structure of dynein-dynactin on microtubules

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-8-1-1-1-1-4-2-1-1-2-1-4-4-4-4-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain V: C.30, C.33, Q.286, C.287 No protein-ligand interaction detected (PLIP) ZN.2: 4 residues within 4Å: Chain V: C.51, C.54, C.70, C.73 No protein-ligand interaction detected (PLIP) ZN.3: 6 residues within 4Å: Chain V: C.76, C.79, M.80, H.81, C.111, C.114 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, Q. et al., Structure of dynein-dynactin on microtubules. To Be Published

Release Date

2025-09-10

Peptides

Alpha-centractin: ABCDEFGI
Actin, cytoplasmic 1: H
Actin-related protein 10: J
F-actin-capping protein subunit alpha-1: K
F-actin-capping protein subunit beta: L
Dynactin subunit 2: MNPQ
Dynactin subunit 3: OR
Dynactin subunit 6: S
Dynactin subunit 5: T
Dynactin subunit 1: UW
Dynactin subunit 4: V
Cytoplasmic dynein 1 heavy chain 1: XY56
Cytoplasmic dynein 1 intermediate chain 2: Z078
Dynein light intermediate chain: 129a
Dynein light chain roadblock: 34bc

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

I
I

H
H

J
J

K
K

L
L

M
M

N
N

P
P

Q
Q

O
O

R
R

S
U

T
V

U
W

W
Z

V
Y

X
e

Y
f

5
m

6
n

Z
g

0
h

7
o

8
p

1
i

2
j

9
q

a
r

3
k

4
l

b
s

c
t

Alpha-centractin

Actin, cytoplasmic 1

Actin-related protein 10

F-actin-capping protein subunit alpha-1

F-actin-capping protein subunit beta

Dynactin subunit 2

Dynactin subunit 3

Dynactin subunit 6

Dynactin subunit 5

Dynactin subunit 1

Dynactin subunit 4

Cytoplasmic dynein 1 heavy chain 1

Cytoplasmic dynein 1 intermediate chain 2

Dynein light intermediate chain

Dynein light chain roadblock

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