- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.10: 8 residues within 4Å:- Chain A: D.192, L.195, A.196, K.201, N.204, L.205, D.208, Q.237
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.192, A:N.204, A:Q.237
- Water bridges: A:D.192, A:N.204
PEG.11: 4 residues within 4Å:- Chain A: H.80, D.82, V.83, P.131
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.80, A:D.82
PEG.16: 8 residues within 4Å:- Chain A: N.135, I.139, D.151, S.152, S.153, V.154, D.198, S.200
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.152, A:S.153, A:V.154, A:S.200
- Water bridges: A:N.135
PEG.17: 4 residues within 4Å:- Chain A: R.187, K.188, I.191, D.192
4 PLIP interactions:4 interactions with chain A- Water bridges: A:K.188, A:K.188, A:D.192, A:D.192
PEG.18: 2 residues within 4Å:- Chain A: E.144
- Ligands: EDO.22
No protein-ligand interaction detected (PLIP)PEG.19: 4 residues within 4Å:- Chain A: D.24, W.28, G.29, H.31
No protein-ligand interaction detected (PLIP)- 1 x D62: (4aS,8aR)-2-(1-{2-aminothieno[2,3-d]pyrimidin-4-yl}piperidin-4-yl)-4-(3,4- dimethoxyphenyl)-1,2,4a,5,8,8a-hexahydrophthalazin-1-one(Non-covalent)
D62.20: 15 residues within 4Å:- Chain A: Y.85, H.86, M.199, D.244, L.245, N.247, T.259, I.262, P.282, M.283, Q.295, G.297, F.298, I.302
- Ligands: EDO.3
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.245, A:I.262, A:F.298, A:I.302
- Hydrogen bonds: A:Q.295
- Water bridges: A:D.198
- pi-Stacking: A:F.298
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Salado, I.G. et al., hPDE4D2 structure with inhibitor NPD-356. To be published
- Release Date
- 2019-04-10
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
SMTL ID : 6fe7.1 (3 other biounits)
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-356
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Related Entries With Identical Sequence
5lbo.1 | 5lbo.2 | 5lbo.3 | 5lbo.4 | 6akr.1 | 6akr.2 | 6akr.3 | 6akr.4 | 6fdi.1 | 6fdi.2 | 6fdi.3 | 6fdi.4 | 6fe7.2 | 6fe7.3 | 6fe7.4 | 6feb.1 | 6feb.2 | 6fet.1 | 6fet.2 | 6fet.3 | 6fet.4 | 6ft0.1 | 6ft0.2 | 6ft0.3 | 6ft0.4 | 6fta.1 | 6fta.2 | 6fta.3 | 6fta.4 | 6ftw.1 more...less...6ftw.2 | 6ftw.3 | 6ftw.4 | 6fw3.1 | 6fw3.2 | 6fw3.3 | 6fw3.4 | 6hwo.1 | 6hwo.2 | 6hwo.3 | 6hwo.4 | 6iag.1 | 6iag.2 | 6iag.3 | 6iag.4 | 6ibf.1 | 6ibf.2 | 6ibf.3 | 6ibf.4 | 6rcw.1 | 6rcw.2 | 6rcw.3 | 6rcw.4 | 7a8q.1 | 7a8q.2 | 7a8q.3 | 7a8q.4 | 7a9v.1 | 7a9v.2 | 7a9v.3 | 7a9v.4 | 7aag.1 | 7aag.2 | 7aag.3 | 7aag.4 | 7ab9.1 | 7ab9.2 | 7ab9.3 | 7ab9.4 | 7abd.1 | 7abd.2 | 7abd.3 | 7abd.4 | 7abe.1 | 7abe.2 | 7abe.3 | 7abe.4 | 7abj.1 | 7abj.2 | 7abj.3 | 7abj.4