- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.12: 10 residues within 4Å:- Chain A: V.100, L.101, S.103, T.104, W.310, V.314, D.317, A.318, I.321
- Ligands: PEG.13
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.100, A:W.310
- Water bridges: A:S.103
PEG.13: 3 residues within 4Å:- Chain A: P.105, D.317
- Ligands: PEG.12
No protein-ligand interaction detected (PLIP)PEG.18: 4 residues within 4Å:- Chain A: T.45, V.46, H.49, I.69
No protein-ligand interaction detected (PLIP)- 1 x E6E: 4-{4-methoxy-3-[(2-methoxyphenyl)methoxy]phenyl}-2-(1-{thieno[3,2-d]pyrimidin-4-yl}piperidin-4-yl)-1,2,4a,5,8,8a-hexahydrophthalazin-1-one(Non-covalent)
E6E.17: 16 residues within 4Å:- Chain A: Y.85, H.86, M.199, D.244, L.245, N.247, T.259, I.262, M.263, F.266, P.282, M.283, S.294, Q.295, F.298
- Ligands: EDO.4
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.245, A:F.266, A:F.266, A:M.283
- Hydrogen bonds: A:Q.295
- pi-Stacking: A:F.298
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, A.K. et al., hPDE4D2 structure with inhibitor NPD-425. To be published
- Release Date
- 2019-03-20
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
D
SMTL ID : 6ft0.4 (3 other biounits)
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-425
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Related Entries With Identical Sequence
5lbo.1 | 5lbo.2 | 5lbo.3 | 5lbo.4 | 6akr.1 | 6akr.2 | 6akr.3 | 6akr.4 | 6fdi.1 | 6fdi.2 | 6fdi.3 | 6fdi.4 | 6fe7.1 | 6fe7.2 | 6fe7.3 | 6fe7.4 | 6feb.1 | 6feb.2 | 6fet.1 | 6fet.2 | 6fet.3 | 6fet.4 | 6ft0.1 | 6ft0.2 | 6ft0.3 | 6fta.1 | 6fta.2 | 6fta.3 | 6fta.4 | 6ftw.1 more...less...6ftw.2 | 6ftw.3 | 6ftw.4 | 6fw3.1 | 6fw3.2 | 6fw3.3 | 6fw3.4 | 6hwo.1 | 6hwo.2 | 6hwo.3 | 6hwo.4 | 6iag.1 | 6iag.2 | 6iag.3 | 6iag.4 | 6ibf.1 | 6ibf.2 | 6ibf.3 | 6ibf.4 | 6rcw.1 | 6rcw.2 | 6rcw.3 | 6rcw.4 | 7a8q.1 | 7a8q.2 | 7a8q.3 | 7a8q.4 | 7a9v.1 | 7a9v.2 | 7a9v.3 | 7a9v.4 | 7aag.1 | 7aag.2 | 7aag.3 | 7aag.4 | 7ab9.1 | 7ab9.2 | 7ab9.3 | 7ab9.4 | 7abd.1 | 7abd.2 | 7abd.3 | 7abd.4 | 7abe.1 | 7abe.2 | 7abe.3 | 7abe.4 | 7abj.1 | 7abj.2 | 7abj.3 | 7abj.4