- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.7: 5 residues within 4Å:- Chain A: P.64, D.66, T.67, N.171, Q.176
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.66
- Water bridges: A:Q.176
EPE.13: 8 residues within 4Å:- Chain A: H.31, V.32, F.33, R.34, E.37, Q.253, L.254, Q.257
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:F.33, A:R.34, A:Q.253, A:Q.257
- Salt bridges: A:H.31, A:E.37, A:E.37
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x D68: 1-(2-{4-[(4aS,8aR)-4-[3,4-bis(difluoromethoxy)phenyl]-1-oxo-1,2,4a,5,8,8a-hexahydrophthalazin-2-yl]piperidin-1-yl}-2-oxoethyl)-4,4-dimethylpiperidine-2,6-dione(Non-covalent)
D68.14: 19 residues within 4Å:- Chain A: H.86, M.199, D.244, L.245, N.247, P.248, Y.255, W.258, T.259, I.262, F.266, P.282, M.283, S.294, Q.295, G.297, F.298, I.302
- Ligands: EDO.3
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.245
- Hydrogen bonds: A:Q.295
- pi-Stacking: A:F.298
- Halogen bonds: A:S.294
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Salado, I.G. et al., hPDE4D2 structure with inhibitor NPD-1439. To be published
- Release Date
- 2019-04-24
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
SMTL ID : 6fet.2 (3 other biounits)
Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-1439
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Related Entries With Identical Sequence
5lbo.1 | 5lbo.2 | 5lbo.3 | 5lbo.4 | 6akr.1 | 6akr.2 | 6akr.3 | 6akr.4 | 6fdi.1 | 6fdi.2 | 6fdi.3 | 6fdi.4 | 6fe7.1 | 6fe7.2 | 6fe7.3 | 6fe7.4 | 6feb.1 | 6feb.2 | 6fet.1 | 6fet.3 | 6fet.4 | 6ft0.1 | 6ft0.2 | 6ft0.3 | 6ft0.4 | 6fta.1 | 6fta.2 | 6fta.3 | 6fta.4 | 6ftw.1 more...less...6ftw.2 | 6ftw.3 | 6ftw.4 | 6fw3.1 | 6fw3.2 | 6fw3.3 | 6fw3.4 | 6hwo.1 | 6hwo.2 | 6hwo.3 | 6hwo.4 | 6iag.1 | 6iag.2 | 6iag.3 | 6iag.4 | 6ibf.1 | 6ibf.2 | 6ibf.3 | 6ibf.4 | 6rcw.1 | 6rcw.2 | 6rcw.3 | 6rcw.4 | 7a8q.1 | 7a8q.2 | 7a8q.3 | 7a8q.4 | 7a9v.1 | 7a9v.2 | 7a9v.3 | 7a9v.4 | 7aag.1 | 7aag.2 | 7aag.3 | 7aag.4 | 7ab9.1 | 7ab9.2 | 7ab9.3 | 7ab9.4 | 7abd.1 | 7abd.2 | 7abd.3 | 7abd.4 | 7abe.1 | 7abe.2 | 7abe.3 | 7abe.4 | 7abj.1 | 7abj.2 | 7abj.3 | 7abj.4