SMTL ID : 6ffi.1

Crystal Structure of mGluR5 in complex with MMPEP at 2.2 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

7 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 11 residues within 4Å: Chain A: N.332, V.336, L.339, G.340, G.343, L.347, C.377, W.380, L.381, V.384, F.388 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.336, A:V.336, A:L.339, A:L.347, A:W.380, A:L.381, A:F.388 OLA.2: 6 residues within 4Å: Chain A: S.3, P.4, V.5, L.24, L.27 Ligands: OLA.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.24 Hydrogen bonds: A:V.5 OLA.3: 6 residues within 4Å: Chain A: Y.80, I.84, L.300, F.307, I.308 Ligands: OLA.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.84, A:L.300, A:F.307 Hydrogen bonds: A:Y.80, A:Y.80 OLA.4: 5 residues within 4Å: Chain A: P.4, C.23, F.68, I.71 Ligands: OLA.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.68, A:F.68 OLA.5: 3 residues within 4Å: Chain A: Y.80, I.84 Ligands: OLA.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.80, A:Y.80, A:I.84 Hydrogen bonds: A:Y.80 OLA.7: 3 residues within 4Å: Chain A: V.5, R.9, I.16 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.16 Salt bridges: A:R.9 OLA.8: 5 residues within 4Å: Chain A: T.29, L.30, T.33, Y.54, C.61 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.29, A:L.30, A:T.33, A:Y.54

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 6 residues within 4Å: Chain A: Y.325, I.327, N.391, Y.392, K.393, I.394 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.393, A:I.394 Water bridges: A:I.395

1 x D8B: 2-[2-(3-methoxyphenyl)ethynyl]-6-methyl-pyridine(Non-covalent)

D8B.9: 16 residues within 4Å: Chain A: G.59, I.60, G.63, S.89, P.90, S.93, Y.94, L.339, I.379, W.380, F.383, S.400, V.401, S.404, A.405, A.408 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.60, A:P.90, A:Y.94, A:L.339, A:W.380, A:W.380, A:A.408 pi-Stacking: A:F.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christopher, J.A. et al., Structure-Based Optimization Strategies for G Protein-Coupled Receptor (GPCR) Allosteric Modulators: A Case Study from Analyses of New Metabotropic Glutamate Receptor 5 (mGlu5) X-ray Structures. J.Med.Chem. (2019)

Release Date

2018-03-07

Peptides

Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5

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