SMTL ID : 6fmc.1

Neuropilin1-b1 domain in complex with EG01377, 0.9 Angstrom structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.90 Å

Oligo State

monomer

Ligands

1 x DUE: (2~{S})-2-[[3-[[5-[4-(aminomethyl)phenyl]-1-benzofuran-7-yl]sulfonylamino]thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid(Non-covalent)

DUE.1: 11 residues within 4Å: Chain A: Y.28, W.32, T.47, D.51, S.77, E.79, T.80, K.82, Y.84, G.145, I.146 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.28, A:T.80 Hydrogen bonds: A:S.77, A:Y.84, A:Y.84, A:I.146 Water bridges: A:Y.28, A:Y.28, A:T.47, A:E.79, A:K.82 Salt bridges: A:D.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Powell, J. et al., Small Molecule Neuropilin-1 Antagonists Combine Antiangiogenic and Antitumor Activity with Immune Modulation through Reduction of Transforming Growth Factor Beta (TGF beta ) Production in Regulatory T-Cells. J. Med. Chem. (2018)

Release Date

2018-10-17

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-1

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