SMTL ID : 6g83.2 (1 other biounit)

Crystal structure of M. tuberculosis DprE1 in complex with sPBTZ169 (sulfonylPBTZ)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: W.36, I.72, A.73, R.74, G.75, L.76, G.77, R.78, S.79, Y.80, N.83, A.84, M.94, A.114, P.136, G.137, T.138, V.141, T.142, G.144, G.145, A.146, A.148, C.149, I.151, H.152, G.153, N.198, G.199, G.202, I.203, I.204, Y.435, A.437, K.438 Ligands: EQ8.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:W.36, A:Y.80, A:T.138 Hydrogen bonds: A:A.73, A:A.73, A:G.75, A:L.76, A:G.77, A:R.78, A:S.79, A:S.79, A:S.79, A:N.83, A:G.137, A:T.142, A:T.142, A:G.145, A:H.152, A:H.152, A:I.204, A:I.204, A:Y.435 Water bridges: A:G.144, A:G.144, A:H.152 pi-Cation interactions: A:K.438, A:K.438

1 x EQ8: [2-(4-cyclohexylsulfonylpiperazin-1-yl)-4-oxidanylidene-6-(trifluoromethyl)-1,3-benzothiazin-8-yl]-oxidanylidene-azanium(Covalent)

EQ8.2: 14 residues within 4Å: Chain A: G.137, H.152, G.153, K.154, S.248, Y.334, Q.356, V.385, K.387, F.389, N.405, C.407, K.438 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.385 Hydrogen bonds: A:K.154, A:K.438 Halogen bonds: A:N.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Piton, J. et al., Structure-Based Drug Design and Characterization of Sulfonyl-Piperazine Benzothiazinone Inhibitors of DprE1 from Mycobacterium tuberculosis. Antimicrob. Agents Chemother. (2018)

Release Date

2018-08-01

Peptides

Decaprenylphosphoryl-beta-D-ribose oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Decaprenylphosphoryl-beta-D-ribose oxidase

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